STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP48U11/U12 small nuclear ribonucleoprotein 48 kDa protein. (339 aa)    
Predicted Functional Partners:
SNRNP35
U11/U12 small nuclear ribonucleoprotein 35 kDa protein.
   
 0.979
SNRNP25
U11/U12 small nuclear ribonucleoprotein 25 kDa protein.
     
 0.966
PDCD7
Programmed cell death protein 7.
   
 0.918
SNRPF
Small nuclear ribonucleoprotein F.
    
 0.869
CWC22
Pre-mRNA-splicing factor CWC22 like protein.
    
 0.834
L5KCB3_PTEAL
Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development.
    
 0.834
ZMAT5
Zinc finger matrin-type protein 5.
    
 
 0.832
SNRPG
Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing.
    
 0.824
L5KUS4_PTEAL
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
    
 0.824
SYF2
Pre-mRNA-splicing factor SYF2.
    
 0.818
Your Current Organism:
Pteropus alecto
NCBI taxonomy Id: 9402
Other names: P. alecto, black flying fox
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