Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CASC3 | L5JUM1_PTEAL | L5JTI8 | L5JUM1 | Protein CASC3. | Protein SMG5. | 0.627 |
CASC3 | PABPC1 | L5JTI8 | L5KAR8 | Protein CASC3. | Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. | 0.420 |
CASC3 | RBM8A | L5JTI8 | L5K368 | Protein CASC3. | RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. | 0.999 |
CASC3 | RNPS1 | L5JTI8 | L5KHI3 | Protein CASC3. | RNA-binding protein with serine-rich domain 1. | 0.788 |
CASC3 | SMG7 | L5JTI8 | L5KYV7 | Protein CASC3. | Protein SMG7. | 0.626 |
CASC3 | UPF1 | L5JTI8 | L5L818 | Protein CASC3. | Regulator of nonsense transcripts 1. | 0.969 |
CASC3 | UPF2 | L5JTI8 | L5L0J9 | Protein CASC3. | Regulator of nonsense transcripts 2. | 0.866 |
CASC3 | UPF3A | L5JTI8 | L5KVM1 | Protein CASC3. | Regulator of nonsense transcripts 3A. | 0.860 |
CASC3 | UPF3B | L5JTI8 | L5L6H1 | Protein CASC3. | Regulator of nonsense transcripts 3B. | 0.908 |
L5JUM1_PTEAL | CASC3 | L5JUM1 | L5JTI8 | Protein SMG5. | Protein CASC3. | 0.627 |
L5JUM1_PTEAL | PABPC1 | L5JUM1 | L5KAR8 | Protein SMG5. | Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. | 0.926 |
L5JUM1_PTEAL | RBM8A | L5JUM1 | L5K368 | Protein SMG5. | RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. | 0.645 |
L5JUM1_PTEAL | RNPS1 | L5JUM1 | L5KHI3 | Protein SMG5. | RNA-binding protein with serine-rich domain 1. | 0.521 |
L5JUM1_PTEAL | SMG1 | L5JUM1 | L5KQD4 | Protein SMG5. | Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family. | 0.804 |
L5JUM1_PTEAL | SMG7 | L5JUM1 | L5KYV7 | Protein SMG5. | Protein SMG7. | 0.979 |
L5JUM1_PTEAL | UPF1 | L5JUM1 | L5L818 | Protein SMG5. | Regulator of nonsense transcripts 1. | 0.984 |
L5JUM1_PTEAL | UPF2 | L5JUM1 | L5L0J9 | Protein SMG5. | Regulator of nonsense transcripts 2. | 0.805 |
L5JUM1_PTEAL | UPF3A | L5JUM1 | L5KVM1 | Protein SMG5. | Regulator of nonsense transcripts 3A. | 0.988 |
L5JUM1_PTEAL | UPF3B | L5JUM1 | L5L6H1 | Protein SMG5. | Regulator of nonsense transcripts 3B. | 0.933 |
PABPC1 | CASC3 | L5KAR8 | L5JTI8 | Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. | Protein CASC3. | 0.420 |
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