STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhEFormate dehydrogenase accessory protein FdhE; Necessary for formate dehydrogenase activity. Belongs to the FdhE family. (302 aa)    
Predicted Functional Partners:
ABK46348.1
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO0103 formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit).
 
  
 0.965
ABK46347.1
Formate dehydrogenase beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
 
  
 0.956
ABK46351.1
TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: son:SO0106 selenocysteine-specific translation elongation factor.
 
   
 0.915
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
   
 0.902
ABK48319.1
Formate dehydrogenase alpha subunit; TIGRFAM: Twin-arginine translocation pathway signal; formate dehydrogenase, alpha subunit; PFAM: DsrC family protein; KEGG: son:SO0101 formate dehydrogenase, major subunit (formate dehydrogenase alpha subunit); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 
 0.867
ABK48321.1
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO0103 formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit).
 
  
 0.851
ABK46947.1
KEGG: son:SO3922 formate dehydrogenase, putative.
 
  
 0.823
ABK48320.1
Formate dehydrogenase beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
 
  
 0.813
fdhD
Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
  
 0.617
ABK46982.1
Transcriptional regulator, ModE family; TIGRFAM: molybdate transport repressor, ModE; Molybdenum-pterin binding; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: son:SO3862 molybdenum transport regulatory protein ModE.
 
   
 0.566
Your Current Organism:
Shewanella sp. ANA3
NCBI taxonomy Id: 94122
Other names: S. sp. ANA-3, Shewanella sp. ANA-3, Shewanella sp. arsenana, Shewanella trabarsenatis
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