STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK47346.1(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (735 aa)    
Predicted Functional Partners:
ABK47349.1
TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: son:SO3442 MazG family protein.
 
 
 0.930
ABK46654.1
PFAM: Ppx/GppA phosphatase; KEGG: son:SO0408 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase.
 
 
 0.923
ABK50030.1
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
  
  
 
0.916
ABK48647.1
PFAM: Ppx/GppA phosphatase; KEGG: son:SO2185 exopolyphosphatase; Belongs to the GppA/Ppx family.
  
 
 0.913
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 0.911
ABK48383.1
PFAM: pyruvate kinase; KEGG: son:SO2491 pyruvate kinase II; Belongs to the pyruvate kinase family.
   
 
 0.903
ABK46630.1
PFAM: adenylate cyclase, class-I; KEGG: son:SO4312 adenylate cyclase CyaA, putative; Belongs to the adenylyl cyclase class-1 family.
     
 0.900
ABK47052.1
TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: son:SO3778 adenylate cyclase CyaB, putative.
     
  0.900
ABK48830.1
TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: formate C-acetyltransferase glycine radical; ATP-cone domain protein; KEGG: son:SO2834 anaerobic ribonucleoside-triphosphate reductase.
     
  0.900
ABK49270.1
KEGG: son:SO1329 adenylate cyclase-related protein.
     
 0.900
Your Current Organism:
Shewanella sp. ANA3
NCBI taxonomy Id: 94122
Other names: S. sp. ANA-3, Shewanella sp. ANA-3, Shewanella sp. arsenana, Shewanella trabarsenatis
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