STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK47508.1KEGG: ppu:PP3180 Smp-30/Cgr1 family protein. (126 aa)    
Predicted Functional Partners:
ABK47507.1
KEGG: ppu:PP3180 Smp-30/Cgr1 family protein.
       0.651
ABK47505.1
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; KEGG: rso:RSc2588 probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
       0.473
ABK47506.1
Hypothetical protein; KEGG: ppu:PP3180 Smp-30/Cgr1 family protein.
       0.473
ABK47504.1
PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1808 probable transporter.
       0.453
ABK47503.1
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: ilo:IL1607 predicted DNA-binding protein, possible transcriptional regulator.
 
     0.426
ABK47509.1
Transcriptional regulator, IclR family; PFAM: regulatory proteins, IclR; KEGG: ppr:PBPRB1669 hypothetical transcriptional regulator.
       0.411
Your Current Organism:
Shewanella sp. ANA3
NCBI taxonomy Id: 94122
Other names: S. sp. ANA-3, Shewanella sp. ANA-3, Shewanella sp. arsenana, Shewanella trabarsenatis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.