STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK47519.1SMART: AAA ATPase; KEGG: rso:RSc2581 probable conjugal transfer protein TrbE. (816 aa)    
Predicted Functional Partners:
ABK47524.1
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rso:RSc2576 probable conjugal transfer lipoprotein TrbG.
 
 
 0.999
ABK47525.1
PFAM: conjugation TrbI family protein; KEGG: rso:RSc2575 probable conjugal transfer trbi transmembrane protein.
 
 
 0.999
ABK47517.1
PFAM: Conjugal transfer protein TrbC; KEGG: rso:RSc2583 probable conjugal transfer trbC transmembrane protein.
 
 
 0.997
ABK47520.1
KEGG: rso:RSc2580 probable conjugal transfer TrbJ signal peptide protein.
 
  
 0.996
ABK47516.1
PFAM: type II secretion system protein E; KEGG: rso:RSc2584 probable conjugal transfer protein TrbB.
 
  
 0.995
ABK47518.1
KEGG: rso:RSc2582 probable conjugal transfer trbD transmembrane protein.
 
  
 0.995
ABK47522.1
PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: rso:RSc2578 putative conjugal transfer trbL transmembrane protein.
 
  
 0.995
ABK47523.1
PFAM: Conjugal transfer protein; KEGG: rso:RSc2577 probable conjugal transfer trbF transmembrane protein.
 
  
 0.994
ABK47514.1
PFAM: TRAG family protein; KEGG: rso:RSc2586 probable plasmid conjugation traG transmembrane protein.
 
  
 0.966
ABK47515.1
PFAM: CopG domain protein DNA-binding domain protein; KEGG: rso:RSc2585 hypothetical/unknown protein.
 
     0.949
Your Current Organism:
Shewanella sp. ANA3
NCBI taxonomy Id: 94122
Other names: S. sp. ANA-3, Shewanella sp. ANA-3, Shewanella sp. arsenana, Shewanella trabarsenatis
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