STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK48527.1PFAM: Integrase, catalytic region; KEGG: pfo:Pfl_2131 integrase, catalytic region. (240 aa)    
Predicted Functional Partners:
ABK48526.1
KEGG: pst:PSPTO4510 ISPsy11, transposase OrfA.
 
    0.728
ABK48357.1
KEGG: pst:PSPTO4510 ISPsy11, transposase OrfA.
 
    0.454
ABK48373.1
Response regulator receiver protein; KEGG: pst:PSPTO4510 ISPsy11, transposase OrfA.
 
    0.454
ABK49526.1
KEGG: pst:PSPTO4510 ISPsy11, transposase OrfA.
 
    0.454
ABK46583.1
Transposase; KEGG: dde:Dde_2987 transposase.
 
    0.440
ABK47783.1
Transposase; KEGG: dde:Dde_2987 transposase.
 
    0.440
ABK47877.1
Transposase; KEGG: dde:Dde_2987 transposase.
 
    0.440
ABK46338.1
Transposase; KEGG: dde:Dde_2987 transposase.
 
    0.439
ABK48589.1
KEGG: son:SOA0129 transposase, IS3 family.
 
    0.412
Your Current Organism:
Shewanella sp. ANA3
NCBI taxonomy Id: 94122
Other names: S. sp. ANA-3, Shewanella sp. ANA-3, Shewanella sp. arsenana, Shewanella trabarsenatis
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