STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK49429.1PFAM: aminoglycoside phosphotransferase; KEGG: son:SO3635 hypothetical phosphotransferase. (363 aa)    
Predicted Functional Partners:
ABK49428.1
PFAM: Nucleotidyl transferase; KEGG: son:SO3634 nucleotidyltransferase family protein.
 
 0.995
ABK48201.1
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO2414 phosphoglycolate phosphatase.
  
  
 0.946
nagZ
Glycoside hydrolase, family 3 domain protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
 
  
 0.939
glmU
Glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. In the C-terminal section; belongs to the t [...]
    
 0.917
agaK
N-acetylglucosamine kinase; Involved in the pathway of N-acetyl-D-galactosamine degradation. Catalyzes the phosphorylation of N-acetyl-D-galactosamine (GalNAc) to yield D-galactosamine 6-phosphate (GalN-6-P). It can also phosphorylate N-acetylglucosamine (GlcNAc). Belongs to the ROK (NagC/XylR) family.
     
  0.900
ABK49209.1
PFAM: PKD domain containing protein; glycoside hydrolase, family 18; Carbohydrate-binding family V/XII; Chitinase A N-terminal domain protein; SMART: chitinase II; KEGG: vfi:VF1598 exochitinase.
     
  0.900
ABK49339.1
beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase, family 20; Carbohydrate-binding, chitobiase/hexosaminidase-type domain protein; glycoside hydrolase, family 20 domain protein; KEGG: son:SO3509 beta-hexosaminidase b precursor.
     
  0.900
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
     0.682
djlA
Heat shock protein DnaJ domain protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host.
       0.577
ABK48336.1
KEGG: son:SO2365 hypothetical protein.
      
 0.567
Your Current Organism:
Shewanella sp. ANA3
NCBI taxonomy Id: 94122
Other names: S. sp. ANA-3, Shewanella sp. ANA-3, Shewanella sp. arsenana, Shewanella trabarsenatis
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