STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdtLPFAM: major facilitator superfamily MFS_1; KEGG: son:SO4021 transporter, putative. (396 aa)    
Predicted Functional Partners:
ABK49808.1
PFAM: regulatory protein, LysR; KEGG: son:SO4020 transcriptional regulator, LysR family.
 
     0.878
ABK49810.1
PFAM: peptidase M16 domain protein; KEGG: son:SO4022 peptidase, M16 family.
       0.452
ABK49195.1
KEGG: vpa:VP2175 putative HAAAP family transport protein.
  
     0.406
Your Current Organism:
Shewanella sp. ANA3
NCBI taxonomy Id: 94122
Other names: S. sp. ANA-3, Shewanella sp. ANA-3, Shewanella sp. arsenana, Shewanella trabarsenatis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.