Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK46252.1 | rnpA | Shewana3_0007 | Shewana3_0008 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.980 |
ABK46252.1 | rsmJ | Shewana3_0007 | Shewana3_4037 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.588 |
coaD | rsmJ | Shewana3_4091 | Shewana3_4037 | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.600 |
rlmJ | rsmJ | Shewana3_4038 | Shewana3_4037 | Protein of unknown function DUF519; Specifically methylates the adenine in position 2030 of 23S rRNA. | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.533 |
rnpA | ABK46252.1 | Shewana3_0008 | Shewana3_0007 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.980 |
rnpA | rsmJ | Shewana3_0008 | Shewana3_4037 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.566 |
rsmJ | ABK46252.1 | Shewana3_4037 | Shewana3_0007 | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.588 |
rsmJ | coaD | Shewana3_4037 | Shewana3_4091 | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.600 |
rsmJ | rlmJ | Shewana3_4037 | Shewana3_4038 | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Protein of unknown function DUF519; Specifically methylates the adenine in position 2030 of 23S rRNA. | 0.533 |
rsmJ | rnpA | Shewana3_4037 | Shewana3_0008 | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.566 |
rsmJ | uppP | Shewana3_4037 | Shewana3_3079 | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. | 0.481 |
uppP | rsmJ | Shewana3_3079 | Shewana3_4037 | Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.481 |