STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2Z6QK79RING-CH-type domain-containing protein. (306 aa)    
Predicted Functional Partners:
A0A2Z6QF03
UBX domain-containing protein.
    
 
 0.763
A0A2Z6QKJ7
CUE domain-containing protein.
    
 
 0.677
A0A2Z6RPV0
NOT2_3_5 domain-containing protein.
    
 
 0.677
A0A2Z6RUV9
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 
 0.622
A0A2Z6RJS5
TPR_REGION domain-containing protein.
    
 
 0.482
A0A2Z6RQW1
Peptidylprolyl isomerase.
    
 
 0.482
A0A2Z6RSU5
Peptidylprolyl isomerase.
    
 
 0.482
A0A2Z6R6S9
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
    
 
 0.475
A0A2Z6Q432
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.469
A0A2Z6RNB2
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.469
Your Current Organism:
Rhizophagus clarus
NCBI taxonomy Id: 94130
Other names: Glomus clarum, R. clarus, Rhizoglomus clarum, Rhizophagus clarus (T.H. Nicolson & N.C. Schenck) C. Walker & A. Schuessler 2010
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