STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2Z6QMY6Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (116 aa)    
Predicted Functional Partners:
A0A2Z6R835
Sm domain-containing protein.
   
 0.999
A0A2Z6RA97
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
A0A2Z6RU85
Small nuclear ribonucleoprotein G.
   
 0.999
A0A2Z6S2H8
Small nuclear ribonucleoprotein Sm D2.
   
 0.999
A0A2Z6SEA2
Small nuclear ribonucleoprotein Sm D3.
   
0.999
A0A2Z6RDW3
Sm domain-containing protein.
   
 0.998
A0A2Z6R318
Tr-type G domain-containing protein.
   
 0.997
A0A2Z6SKF7
Uncharacterized protein.
   
 0.997
A0A2Z6RUJ8
RRM domain-containing protein.
   
 0.996
A0A2Z6S1L4
PSP domain-containing protein.
    
 0.995
Your Current Organism:
Rhizophagus clarus
NCBI taxonomy Id: 94130
Other names: Glomus clarum, R. clarus, Rhizoglomus clarum, Rhizophagus clarus (T.H. Nicolson & N.C. Schenck) C. Walker & A. Schuessler 2010
Server load: low (28%) [HD]