STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2Z6QT04Uncharacterized protein. (584 aa)    
Predicted Functional Partners:
A0A2Z6S7H6
MIF4G domain-containing protein.
    
 0.727
A0A2Z6R8Z3
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.678
A0A2Z6S3X0
S1 motif domain-containing protein.
   
 0.674
A0A2Z6RRT3
RRM domain-containing protein.
    
 0.673
A0A2Z6SGR1
Nuclear cap-binding protein subunit 2.
    
 0.673
A0A2Z6RA97
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.670
A0A2Z6QMY6
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.655
A0A2Z6R835
Sm domain-containing protein.
    
 0.651
A0A2Z6Q3B9
Uncharacterized protein.
    
 0.649
A0A2Z6SEA2
Small nuclear ribonucleoprotein Sm D3.
    
 0.649
Your Current Organism:
Rhizophagus clarus
NCBI taxonomy Id: 94130
Other names: Glomus clarum, R. clarus, Rhizoglomus clarum, Rhizophagus clarus (T.H. Nicolson & N.C. Schenck) C. Walker & A. Schuessler 2010
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