STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2Z6QY22Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding. (515 aa)    
Predicted Functional Partners:
A0A2Z6RT36
Uncharacterized protein.
    
 0.999
A0A2Z6QNE8
Uncharacterized protein.
    
 0.893
A0A2Z6SMT3
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
   
 0.881
A0A2Z6SGD7
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
     
 0.875
A0A2Z6QZ92
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
   
 0.871
A0A2Z6RI59
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
   
 0.871
A0A2Z6QIQ9
Alkyl transferase; Belongs to the UPP synthase family.
     
 0.863
A0A2Z6Q0C8
Uncharacterized protein.
     
 0.853
A0A2Z6R6B1
Uncharacterized protein.
     
 0.825
A0A2Z6R2Y9
Uncharacterized protein.
    
 0.778
Your Current Organism:
Rhizophagus clarus
NCBI taxonomy Id: 94130
Other names: Glomus clarum, R. clarus, Rhizoglomus clarum, Rhizophagus clarus (T.H. Nicolson & N.C. Schenck) C. Walker & A. Schuessler 2010
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