STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USB1U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (329 aa)    
Predicted Functional Partners:
A0A2Z6SRC6
Uncharacterized protein.
    
   0.913
A0A2Z6SMV4
Uncharacterized protein.
    
 
 0.753
A0A2Z6RLZ0
WD_REPEATS_REGION domain-containing protein.
    
   0.725
A0A2Z6RM96
Uncharacterized protein.
    
   0.721
A0A2Z6RYI8
G-patch domain-containing protein.
    
   0.710
A0A2Z6RQT9
RRM domain-containing protein.
    
   0.695
A0A2Z6QPY7
SKIP_SNW domain-containing protein.
    
 
 0.671
A0A2Z6R5P0
Uncharacterized protein.
    
   0.658
A0A2Z6SNY6
Uncharacterized protein.
    
   0.649
A0A2Z6QQ75
Uncharacterized protein.
    
   0.558
Your Current Organism:
Rhizophagus clarus
NCBI taxonomy Id: 94130
Other names: Glomus clarum, R. clarus, Rhizoglomus clarum, Rhizophagus clarus (T.H. Nicolson & N.C. Schenck) C. Walker & A. Schuessler 2010
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