STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2Z6SHA5Uncharacterized protein. (879 aa)    
Predicted Functional Partners:
A0A2Z6Q1P3
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
   
 0.979
A0A2Z6RAP4
Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.
    
 0.973
A0A2Z6S8M2
Uncharacterized protein.
    
 0.912
A0A2Z6S473
Uncharacterized protein.
    
 0.753
A0A2Z6QW26
WD_REPEATS_REGION domain-containing protein.
    
 0.692
A0A2Z6RDX5
B30.2/SPRY domain-containing protein.
    
 0.684
A0A2Z6RPV2
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.680
A0A2Z6QGK1
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.657
A0A2Z6SLG5
6PF2K domain-containing protein.
 
  
   0.657
A0A2Z6Q6M4
Uncharacterized protein.
    
 0.640
Your Current Organism:
Rhizophagus clarus
NCBI taxonomy Id: 94130
Other names: Glomus clarum, R. clarus, Rhizoglomus clarum, Rhizophagus clarus (T.H. Nicolson & N.C. Schenck) C. Walker & A. Schuessler 2010
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