STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF61050.1Acyl-homoserine lactone synthase. (202 aa)    
Predicted Functional Partners:
SMF61052.1
LuxR family transcriptional regulator, quorum-sensing system regulator CciR; Manually curated.
 
 
 0.940
SMF61054.1
LuxR family transcriptional regulator, quorum-sensing system regulator CciR.
 
 
 0.906
SMF61048.1
Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family.
 
   
 0.898
SMF61046.1
Regulatory protein, gntR family.
       0.773
SMF61059.1
Regulatory protein, luxR family.
  
 
 0.709
SMF70244.1
DNA-binding transcriptional regulator, CsgD family.
 
 
 0.703
SMF64924.1
DNA-binding transcriptional regulator, CsgD family.
  
 
 0.648
SMF65359.1
Regulatory protein, luxR family.
  
 
 0.648
SMF67410.1
Diguanylate cyclase/phosphodiesterase.
    
  0.504
SMF73650.1
PAS domain S-box-containing protein.
     
 0.497
Your Current Organism:
Sphingomonas indica
NCBI taxonomy Id: 941907
Other names: CCM 7882, DSM 25434, Sphingomonas indica Niharika et al. 2012, Sphingomonas sp. Dd16, strain Dd16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.