STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF61281.1Zn-dependent amino-or carboxypeptidase, M28 family. (555 aa)    
Predicted Functional Partners:
SMF61282.1
Agmatine deiminase; Belongs to the agmatine deiminase family.
       0.849
SMF67600.1
TonB-dependent Receptor Plug Domain.
  
     0.703
SMF61280.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
 
    0.669
SMF62019.1
TonB-dependent Receptor Plug Domain.
  
     0.660
SMF66865.1
TonB-dependent Receptor Plug Domain.
  
     0.659
SMF67776.1
Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family.
  
  0.658
SMF67743.1
Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family.
  
  0.650
SMF76809.1
Zn-dependent amino-or carboxypeptidase, M28 family.
  
     0.641
SMF61283.1
N-carbamoylputrescine amidase.
  
    0.602
SMF76094.1
Peptidyl-dipeptidase A.
 
     0.545
Your Current Organism:
Sphingomonas indica
NCBI taxonomy Id: 941907
Other names: CCM 7882, DSM 25434, Sphingomonas indica Niharika et al. 2012, Sphingomonas sp. Dd16, strain Dd16
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