STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF61346.1Acetyltransferase (GNAT) domain-containing protein. (295 aa)    
Predicted Functional Partners:
SMF61347.1
Polysaccharide deacetylase.
 
     0.961
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.843
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.699
apaG
ApaG protein.
       0.661
SMF75336.1
Exosortase A system-associated hydrolase 1.
 
     0.607
SMF61693.1
Limonene-1,2-epoxide hydrolase.
  
     0.540
SMF75355.1
Phosphopantetheine attachment site.
 
     0.534
SMF64701.1
Probable O-glycosylation ligase, exosortase A-associated.
 
     0.494
SMF61913.1
Limonene-1,2-epoxide hydrolase.
  
     0.480
SMF75477.1
FemAB-related protein, PEP-CTERM system-associated.
 
     0.442
Your Current Organism:
Sphingomonas indica
NCBI taxonomy Id: 941907
Other names: CCM 7882, DSM 25434, Sphingomonas indica Niharika et al. 2012, Sphingomonas sp. Dd16, strain Dd16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.