MEF1 protein (Tolypocladium paradoxum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MEF1

Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (813 aa)

Predicted Functional Partners:

TPAR_07732

0.986

TPAR_07995

0.949

TPAR_06210

0.949

TPAR_02662

0.949

TPAR_01555

0.949

TPAR_00386

0.949

TPAR_00015

0.949

TPAR_03098

0.947

TPAR_06385

0.946

TPAR_08889

0.943

Your Current Organism:

Tolypocladium paradoxum

NCBI taxonomy Id: 94208
Other names: Cordyceps paradoxa, Elaphocordyceps paradoxa, T. paradoxum, Tolypocladium paradoxum (Kobayasi) Quandt, Kepler & Spatafora, 2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MEF1	TPAR_00015	A0A2S4KRQ5	A0A2S4LBJ6	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.949
MEF1	TPAR_00386	A0A2S4KRQ5	A0A2S4LAH4	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	60S ribosomal protein L35.	0.949
MEF1	TPAR_01555	A0A2S4KRQ5	A0A2S4L754	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.949
MEF1	TPAR_02662	A0A2S4KRQ5	A0A2S4L421	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.949
MEF1	TPAR_03098	A0A2S4KRQ5	A0A2S4L2N1	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	60S ribosomal protein L7.	0.947
MEF1	TPAR_06210	A0A2S4KRQ5	A0A2S4KTV7	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	60S ribosomal protein L25.	0.949
MEF1	TPAR_06385	A0A2S4KRQ5	A0A2S4KT73	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	37S ribosomal protein MRP17, mitochondrial.	0.946
MEF1	TPAR_07732	A0A2S4KRQ5	A0A2S4KPH7	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	Diphthine--ammonia ligase.	0.986
MEF1	TPAR_07995	A0A2S4KRQ5	A0A2S4KNP5	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	60S ribosomal protein L5.	0.949
MEF1	TPAR_08889	A0A2S4KRQ5	A0A2S4KL14	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	Ribosomal protein S16.	0.943
TPAR_00015	MEF1	A0A2S4LBJ6	A0A2S4KRQ5	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.949
TPAR_00015	TPAR_00386	A0A2S4LBJ6	A0A2S4LAH4	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	60S ribosomal protein L35.	0.999
TPAR_00015	TPAR_01555	A0A2S4LBJ6	A0A2S4L754	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
TPAR_00015	TPAR_02662	A0A2S4LBJ6	A0A2S4L421	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.999
TPAR_00015	TPAR_03098	A0A2S4LBJ6	A0A2S4L2N1	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	60S ribosomal protein L7.	0.999
TPAR_00015	TPAR_06210	A0A2S4LBJ6	A0A2S4KTV7	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	60S ribosomal protein L25.	0.999
TPAR_00015	TPAR_06385	A0A2S4LBJ6	A0A2S4KT73	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	37S ribosomal protein MRP17, mitochondrial.	0.998
TPAR_00015	TPAR_07995	A0A2S4LBJ6	A0A2S4KNP5	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	60S ribosomal protein L5.	0.999
TPAR_00015	TPAR_08889	A0A2S4LBJ6	A0A2S4KL14	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	Ribosomal protein S16.	0.998
TPAR_00386	MEF1	A0A2S4LAH4	A0A2S4KRQ5	60S ribosomal protein L35.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.949

page 1 of 5

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About