Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TPAR_00385 | TPAR_06363 | A0A2S4LAD6 | A0A2S4KTC7 | Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. | Protein CASP. | 0.583 |
TPAR_01422 | TPAR_03343 | A0A2S4L7E9 | A0A2S4L209 | Diphthine synthase. | U3 small nucleolar RNA-associated protein 22. | 0.556 |
TPAR_01422 | TPAR_04930 | A0A2S4L7E9 | A0A2S4KXG9 | Diphthine synthase. | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | 0.513 |
TPAR_01422 | TPAR_05782 | A0A2S4L7E9 | A0A2S4KUZ9 | Diphthine synthase. | U4/U5/U6 small nuclear ribonucleoprotein prp3. | 0.526 |
TPAR_01422 | TPAR_06363 | A0A2S4L7E9 | A0A2S4KTC7 | Diphthine synthase. | Protein CASP. | 0.527 |
TPAR_01422 | TPAR_07477 | A0A2S4L7E9 | A0A2S4KQ57 | Diphthine synthase. | 37S ribosomal protein S5, mitochondrial; Belongs to the universal ribosomal protein uS5 family. | 0.539 |
TPAR_01445 | TPAR_06363 | A0A2S4L7H1 | A0A2S4KTC7 | Guanylate kinase. | Protein CASP. | 0.520 |
TPAR_01445 | TPAR_06876 | A0A2S4L7H1 | A0A2S4KRY3 | Guanylate kinase. | GRIP domain-containing protein. | 0.882 |
TPAR_03343 | TPAR_01422 | A0A2S4L209 | A0A2S4L7E9 | U3 small nucleolar RNA-associated protein 22. | Diphthine synthase. | 0.556 |
TPAR_03343 | TPAR_04930 | A0A2S4L209 | A0A2S4KXG9 | U3 small nucleolar RNA-associated protein 22. | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | 0.506 |
TPAR_03343 | TPAR_05782 | A0A2S4L209 | A0A2S4KUZ9 | U3 small nucleolar RNA-associated protein 22. | U4/U5/U6 small nuclear ribonucleoprotein prp3. | 0.655 |
TPAR_03343 | TPAR_06363 | A0A2S4L209 | A0A2S4KTC7 | U3 small nucleolar RNA-associated protein 22. | Protein CASP. | 0.526 |
TPAR_03343 | TPAR_07477 | A0A2S4L209 | A0A2S4KQ57 | U3 small nucleolar RNA-associated protein 22. | 37S ribosomal protein S5, mitochondrial; Belongs to the universal ribosomal protein uS5 family. | 0.906 |
TPAR_04930 | TPAR_01422 | A0A2S4KXG9 | A0A2S4L7E9 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | Diphthine synthase. | 0.513 |
TPAR_04930 | TPAR_03343 | A0A2S4KXG9 | A0A2S4L209 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | U3 small nucleolar RNA-associated protein 22. | 0.506 |
TPAR_04930 | TPAR_05782 | A0A2S4KXG9 | A0A2S4KUZ9 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | U4/U5/U6 small nuclear ribonucleoprotein prp3. | 0.518 |
TPAR_04930 | TPAR_06363 | A0A2S4KXG9 | A0A2S4KTC7 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | Protein CASP. | 0.521 |
TPAR_04930 | TPAR_07477 | A0A2S4KXG9 | A0A2S4KQ57 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | 37S ribosomal protein S5, mitochondrial; Belongs to the universal ribosomal protein uS5 family. | 0.522 |
TPAR_05782 | TPAR_01422 | A0A2S4KUZ9 | A0A2S4L7E9 | U4/U5/U6 small nuclear ribonucleoprotein prp3. | Diphthine synthase. | 0.526 |
TPAR_05782 | TPAR_03343 | A0A2S4KUZ9 | A0A2S4L209 | U4/U5/U6 small nuclear ribonucleoprotein prp3. | U3 small nucleolar RNA-associated protein 22. | 0.655 |
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