STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TPAR_06359E3 ubiquitin-protein ligase HRD1. (833 aa)    
Predicted Functional Partners:
TPAR_01355
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.995
TPAR_00819
Protein sel-1.
   
 0.995
TPAR_02741
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
 0.994
TPAR_03411
Protein OS-9.
   
 0.993
TPAR_03738
Cell division control protein 48.
    
 0.987
TPAR_06065
Ubiquitin-conjugating enzyme E2-18 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.965
TPAR_08334
ATPase family protein.
    
 0.955
TPAR_03351
BZIP domain-containing protein.
    
  0.909
TPAR_06498
3-hydroxy-3-methylglutaryl coenzyme A reductase.
   
 
 0.879
TPAR_08367
ERAD-associated E3 ubiquitin-protein ligase doa10.
    
 
 0.863
Your Current Organism:
Tolypocladium paradoxum
NCBI taxonomy Id: 94208
Other names: Cordyceps paradoxa, Elaphocordyceps paradoxa, T. paradoxum, Tolypocladium paradoxum (Kobayasi) Quandt, Kepler & Spatafora, 2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.