STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO14602.1Extracellular protein, gamma-d-glutamate-meso-dia minopimelate muropeptidase. (242 aa)    
Predicted Functional Partners:
KRO14591.1
Extracellular protein.
  
     0.564
KRO14826.1
Muramidase.
 
   
 0.503
KRO08360.1
Extracellular protein.
  
     0.502
KRO08361.1
Extracellular protein.
  
     0.501
KRO14601.1
Transcription regulator.
       0.501
KRO09115.1
Integral membrane protein.
 
 
  0.469
KRO14800.1
Lysozyme.
 
   
 0.418
Your Current Organism:
Lactobacillus xiangfangensis
NCBI taxonomy Id: 942150
Other names: L. xiangfangensis, LMG 26013, LMG:26013, Lactobacillus sp. 3.1.1, Lactobacillus xiangfangensis Gu et al. 2012, NBRC 108914, NCIMB 14687, strain 3.1.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.