STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO14926.1Hypothetical protein. (432 aa)    
Predicted Functional Partners:
KRO08079.1
Neopullulanase; Belongs to the glycosyl hydrolase 13 family.
  
 0.645
KRO11616.1
Glucan 1,6-alpha-glucosidase.
  
 0.645
KRO10837.1
Alpha-glucosidase.
  
 0.645
KRO10842.1
Alpha-amylase.
  
 0.645
KRO10847.1
Alpha-glucosidase.
  
 0.645
KRO10888.1
Alpha, alpha-phosphotrehalase.
  
 0.645
KRO11246.1
Hypothetical protein.
    
 0.562
KRO10800.1
Hypothetical protein.
 
  
 0.562
KRO14927.1
Hydrolase family protein.
       0.532
truB
Trna pseudouridine synthase b; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
   
   0.438
Your Current Organism:
Lactobacillus xiangfangensis
NCBI taxonomy Id: 942150
Other names: L. xiangfangensis, LMG 26013, LMG:26013, Lactobacillus sp. 3.1.1, Lactobacillus xiangfangensis Gu et al. 2012, NBRC 108914, NCIMB 14687, strain 3.1.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.