STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
argR-2Arginine catabolic regulator; Regulates arginine biosynthesis genes. (155 aa)    
Predicted Functional Partners:
argH
Argininosuccinate lyase (asal).
  
  
 0.788
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.788
argS
Arginyl-trna synthetase.
  
  
 0.664
KRO11761.1
Aminotransferase.
     
 0.603
KRO11763.1
Penicillin-binding protein 2A.
  
    0.538
pheT
Phenylalanyl-trna synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.503
KRO14491.1
DNA-3-methyladenine glycosylase I.
  
    0.442
KRO10911.1
DNA-3-methyladenine glycosylase I.
  
    0.442
pyrE
Orotate phosphoribosyltransferase (oprt) (oprtase); Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
      
 0.430
KRO11760.1
Amino acid efflux protein.
     
 0.427
Your Current Organism:
Lactobacillus xiangfangensis
NCBI taxonomy Id: 942150
Other names: L. xiangfangensis, LMG 26013, LMG:26013, Lactobacillus sp. 3.1.1, Lactobacillus xiangfangensis Gu et al. 2012, NBRC 108914, NCIMB 14687, strain 3.1.1
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