STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKG52744.1Putative regulatory protein, FmdB family. (72 aa)    
Predicted Functional Partners:
livF
Branched-chain amino acid transport protein LivF.
       0.502
livH
High-affinity branched-chain amino acid transport system permease LivH; Belongs to the binding-protein-dependent transport system permease family.
       0.499
livM
Branched-chain amino acid transport system permease LivM; Belongs to the binding-protein-dependent transport system permease family.
       0.499
AKG52743.1
Hypothetical protein.
 
     0.498
livG
Branched-chain amino acid transport protein LivG.
       0.495
queD
Queuosine biosynthesis QueD PTPS-I/Folate biosynthesis protein PTPS-III.
       0.406
Your Current Organism:
Dehalogenimonas sp. WBC2
NCBI taxonomy Id: 943347
Other names: D. sp. WBC-2, Dehalogenimonas sp. WBC-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.