STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OEU99465.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)    
Predicted Functional Partners:
OEU99466.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.807
OEU97839.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.625
OEV02363.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.581
OEU97141.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.575
OEV02107.1
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.416
Your Current Organism:
Streptomyces qinglanensis
NCBI taxonomy Id: 943816
Other names: CGMCC 4.6825, DSM 42035, S. qinglanensis, Streptomyces qinglanensis Hu et al. 2012, Streptomyces sp. 172205, Streptomyces sp. VJPR 15, strain 172205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.