STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ungUracil-DNA glycosylase; Functional Classification (COG): DNA replication, recombination, and repair; Predicted KEGG Orthology: K03648. (223 aa)    
Predicted Functional Partners:
mgs1
ATPase, AAA family; Functional Classification (COG): DNA replication, recombination, and repair; Predicted KEGG Orthology: K07478.
     
 0.911
pheS
Phenylalanyl-tRNA synthetase alpha chain; Functional Classification (COG): Translation, ribosomal structure and biogenesis; Predicted KEGG Orthology: K01889.
     
 0.911
dnaN
DNA polymerase III beta subunit; Functional Classification (COG): DNA replication, recombination, and repair; Predicted KEGG Orthology: K02338.
  
 
 0.856
pheT
Phenylalanyl-tRNA synthetase beta chain; Functional Classification (COG): Translation, ribosomal structure and biogenesis; Predicted KEGG Orthology: K01890.
       0.854
glyA
Serine hydroxymethyltransferase; Functional Classification (COG): Amino acid transport and metabolism; Predicted KEGG Orthology: K00600.
  
  
 0.834
nfo
Probable endonuclease 4; Functional Classification (COG): DNA replication, recombination, and repair; Predicted KEGG Orthology: K01151.
   
 
 0.646
rnhB-1
Ribonuclease; Functional Classification (COG): DNA replication, recombination, and repair; Predicted KEGG Orthology: K03471.
  
  
 0.609
polA
DNA polymerase I; Functional Classification (COG): DNA replication, recombination, and repair; Predicted KEGG Orthology: K02335.
  
  
 0.602
ADV34135.1
Hypothetical Protein.
       0.566
yitU
COF family HAD hydrolase protein; Functional Classification (COG): General function prediction only; Predicted KEGG Orthology: K07024.
     
 0.545
Your Current Organism:
Mycoplasma fermentans
NCBI taxonomy Id: 943945
Other names: M. fermentans M64, Mycoplasma fermentans M64, Mycoplasma fermentans str. M64, Mycoplasma fermentans strain M64
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