STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
licCACTP:phosphocholine cytidylyltransferase/choline kinase; Functional Classification (COG): Cell envelope biogenesis, outer membrane. (539 aa)    
Predicted Functional Partners:
ADV34185.1
Putative membrane protein.
 
  
 0.980
ADV34182.1
Lipopolysaccharide cholinephosphotransferase LicD; Functional Classification (COG): Cell envelope biogenesis, outer membrane; Predicted KEGG Orthology: K07271.
 
   
 0.922
ADV34189.1
Conserved Hypothetical Protein; Functional Classification (COG): Cell envelope biogenesis, outer membrane; Predicted KEGG Orthology: K07271; pfam04991, LicD, LICD Protein Family. The LICD family of proteins show high sequence similarity and are involved in phosphorylcholine metabolism. There is evidence to show that LicD2 mutants have a reduced ability to take up choline, have decreased ability to adhere to host cells and are less virulent.
 
   
 0.911
ADV35051.1
Nucleotidyl transferase; Functional Classification (COG): Cell envelope biogenesis, outer membrane.
 
     0.792
ADV34181.1
Putative glycosyltransferase; Functional Classification (COG): Cell envelope biogenesis, outer membrane.
  
  
 0.588
rplM
50S ribosomal protein L13; Functional Classification (COG): Translation, ribosomal structure and biogenesis; Predicted KEGG Orthology: K02871.
       0.515
rpsI
30S ribosomal protein S9; Functional Classification (COG): Translation, ribosomal structure and biogenesis; Predicted KEGG Orthology: K02996.
       0.512
ldhD
D-lactate dehydrogenase; Functional Classification (COG): Energy production and conversion/Coenzyme metabolism/General function prediction only; Predicted KEGG Orthology: K03778.
  
    0.449
ADV34184.1
Transporter, auxin efflux carrier family; Functional Classification (COG): General function prediction only; Predicted KEGG Orthology: K07088.
       0.442
Your Current Organism:
Mycoplasma fermentans
NCBI taxonomy Id: 943945
Other names: M. fermentans M64, Mycoplasma fermentans M64, Mycoplasma fermentans str. M64, Mycoplasma fermentans strain M64
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