STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoBDNA-directed RNA polymerase subunit beta; Functional Classification (COG): Transcription; Predicted KEGG Orthology: K03043. (1205 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase subunit beta; Functional Classification (COG): Transcription; Predicted KEGG Orthology: K03046.
 0.999
rpoA
DNA-directed RNA polymerase subunit alpha; Functional Classification (COG): Transcription; Predicted KEGG Orthology: K03040.
 
 0.999
nusA
N-utilization substance protein A; Functional Classification (COG): Transcription; Predicted KEGG Orthology: K02600.
  
 0.995
rplK
50S ribosomal protein L11; Functional Classification (COG): Translation, ribosomal structure and biogenesis; Predicted KEGG Orthology: K02867.
  
 
 0.992
rplF
50S ribosomal protein L6; Functional Classification (COG): Translation, ribosomal structure and biogenesis; Predicted KEGG Orthology: K02933.
  
 
 0.991
rpoD
Putative RNA polymerase sigma factor; Functional Classification (COG): Transcription; Predicted KEGG Orthology: K03086.
  
 0.989
rpsJ
30S ribosomal protein S10; Functional Classification (COG): Translation, ribosomal structure and biogenesis; Predicted KEGG Orthology: K02946.
  
 0.984
greA
Transcription elongation factor; Functional Classification (COG): Transcription; Predicted KEGG Orthology: K03624.
  
 
 0.982
rpsQ
30S ribosomal protein S17; Functional Classification (COG): Translation, ribosomal structure and biogenesis; Predicted KEGG Orthology: K02961.
  
 
 0.982
rpsB
30S ribosomal protein S2; Functional Classification (COG): Translation, ribosomal structure and biogenesis; Predicted KEGG Orthology: K02967.
 
 0.981
Your Current Organism:
Mycoplasma fermentans
NCBI taxonomy Id: 943945
Other names: M. fermentans M64, Mycoplasma fermentans M64, Mycoplasma fermentans str. M64, Mycoplasma fermentans strain M64
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