STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ruvB-3Holliday junction ATP-dependent DNA helicase RuvB; Functional Classification (COG): DNA replication, recombination, and repair; Predicted KEGG Orthology: K03551. (320 aa)    
Predicted Functional Partners:
ruvA-3
Holliday junction ATP-dependent DNA helicase RuvA; Functional Classification (COG): DNA replication, recombination, and repair; Predicted KEGG Orthology: K03550.
 
 0.974
ruvB-1
Holliday junction ATP-dependent DNA helicase RuvB; Functional Classification (COG): DNA replication, recombination, and repair.
  
  
 
0.926
ruvA-1
Holliday junction ATP-dependent DNA helicase RuvA; Functional Classification (COG): DNA replication, recombination, and repair; Predicted KEGG Orthology: K03550.
  
 0.877
ruvA-2
Holliday junction ATP-dependent DNA helicase RuvA; Functional Classification (COG): DNA replication, recombination, and repair; Predicted KEGG Orthology: K03550.
  
 0.877
ruvA-5
Holliday junction ATP-dependent DNA helicase RuvA; Functional Classification (COG): DNA replication, recombination, and repair; Predicted KEGG Orthology: K03550.
  
 0.877
secD
Protein-export membrane protein; Functional Classification (COG): Intracellular trafficking and secretion; Predicted KEGG Orthology: K12257.
     
 0.785
uvrA
Excinuclease ABC subunit A; Functional Classification (COG): DNA replication, recombination, and repair; Predicted KEGG Orthology: K03701.
  
 
 0.615
uvrC
UvrABC system protein C; Functional Classification (COG): DNA replication, recombination, and repair; Predicted KEGG Orthology: K03703.
  
 
 0.595
uvrB
UvrABC system protein B; Functional Classification (COG): DNA replication, recombination, and repair; Predicted KEGG Orthology: K03702.
    
 0.594
ADV34818.1
Hypothetical Protein; Pfam01541, GIY-YIG, GIY-YIG catalytic domain. This domain called GIY-YIG is found in the amino terminal region of excinuclease abc subunit c (uvrC), bacteriophage T4 endonucleases segA, segB, segC, segD and segE; it is also found in putative endonucleases encoded by group I introns of fungi and phage. The structure of I-TevI a GIY-YIG endonuclease, reveals a novel alpha/beta-fold with a central three-stranded antiparallel beta-sheet flanked by three helices. The most conserved and putative catalytic residues are located on a shallow, concave surface and include a [...]
  
 
 0.548
Your Current Organism:
Mycoplasma fermentans
NCBI taxonomy Id: 943945
Other names: M. fermentans M64, Mycoplasma fermentans M64, Mycoplasma fermentans str. M64, Mycoplasma fermentans strain M64
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