STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV34614.1Hypothetical Protein. (591 aa)    
Predicted Functional Partners:
ADV34613.1
Hypothetical Protein.
       0.737
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Functional Classification (COG): Secondary metabolites biosynthesis, transport, and catabolism/General function prediction only; Predicted KEGG Orthology: K00065.
       0.721
ADV34610.1
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Functional Classification (COG): Carbohydrate transport and metabolism; Predicted KEGG Orthology: K01625.
       0.721
ADV34611.1
2-dehydro-3-deoxygluconokinase; Functional Classification (COG): Carbohydrate transport and metabolism; Predicted KEGG Orthology: K00874.
       0.721
ADV34612.1
Hypothetical Protein; Predicted KEGG Orthology: K01727; cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family. This family consists of a group of secreted bacterial lyase enzymes capable of acting on glycosaminoglycans, such as hyaluronan and chondroitin, in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen. These are broad-specificity glycosaminoglycan lyases which recognize uronyl residues in polysaccharides and cleave their glycosidic bonds via a beta-elimination reaction to form a double bond between C-4 and C-5 of the [...]
       0.721
ADV34605.1
PTS system, IIC component; Functional Classification (COG): Carbohydrate transport and metabolism; Predicted KEGG Orthology: K02746.
       0.696
ADV34606.1
PTS system, IID component; Functional Classification (COG): Carbohydrate transport and metabolism; Predicted KEGG Orthology: K02747.
       0.696
ADV34607.1
PTS system, IIA component; Functional Classification (COG): Carbohydrate transport and metabolism; Predicted KEGG Orthology: K02744.
       0.696
ADV34608.1
Hypothetical Protein.
       0.696
ADV34604.1
PTS system, IIB component; Functional Classification (COG): Carbohydrate transport and metabolism; Predicted KEGG Orthology: K02745.
       0.682
Your Current Organism:
Mycoplasma fermentans
NCBI taxonomy Id: 943945
Other names: M. fermentans M64, Mycoplasma fermentans M64, Mycoplasma fermentans str. M64, Mycoplasma fermentans strain M64
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