STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
texPutative RNA binding protein; Functional Classification (COG): Transcription; Predicted KEGG Orthology: K06959. (718 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; Functional Classification (COG): Transcription; Predicted KEGG Orthology: K03040.
    
 0.950
rpoB
DNA-directed RNA polymerase subunit beta; Functional Classification (COG): Transcription; Predicted KEGG Orthology: K03043.
   
 0.922
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Functional Classification (COG): Secondary metabolites biosynthesis, transport, and catabolism/General function prediction only; Predicted KEGG Orthology: K00065.
   
   0.558
ileS
Isoleucyl-tRNA synthetase; Functional Classification (COG): Translation, ribosomal structure and biogenesis; Predicted KEGG Orthology: K01870.
  
    0.481
lspA
Lipoprotein signal peptidase; Functional Classification (COG): Cell envelope biogenesis, outer membrane/Intracellular trafficking and secretion; Predicted KEGG Orthology: K03101.
       0.466
pyrG
CTP synthase; Functional Classification (COG): Nucleotide transport and metabolism; Predicted KEGG Orthology: K01937.
       0.418
atpD
ATP synthase subunit beta; Functional Classification (COG): Energy production and conversion; Predicted KEGG Orthology: K02112.
  
 
 0.410
Your Current Organism:
Mycoplasma fermentans
NCBI taxonomy Id: 943945
Other names: M. fermentans M64, Mycoplasma fermentans M64, Mycoplasma fermentans str. M64, Mycoplasma fermentans strain M64
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