carA protein (Arcobacter sp. L) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

carA

Carbamoyl phosphate synthase small subunit; Belongs to the CarA family. (372 aa)

Predicted Functional Partners:

pyrB

0.999

carB

0.999

ABLL_1573

0.988

purF

0.966

purQ

0.954

ABLL_1108

0.946

ABLL_2483

0.937

argG

0.931

ABLL_2455

0.922

ABLL_2302

0.919

Your Current Organism:

Arcobacter sp. L

NCBI taxonomy Id: 944547
Other names: A. sp. L

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABLL_1108	ABLL_2455	ABLL_1108	ABLL_2455	Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	Oxidoreductase.	0.990
ABLL_1108	carA	ABLL_1108	ABLL_0202	Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	Carbamoyl phosphate synthase small subunit; Belongs to the CarA family.	0.946
ABLL_1108	carB	ABLL_1108	ABLL_1272	Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	Carbamoyl phosphate synthase large subunit; Belongs to the CarB family.	0.953
ABLL_1108	purF	ABLL_1108	ABLL_2584	Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.	0.541
ABLL_1108	pyrB	ABLL_1108	ABLL_0397	Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	Aspartate carbamoyltransferase catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	0.946
ABLL_1573	ABLL_2302	ABLL_1573	ABLL_2302	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Glutamate synthase alpha subunit.	0.495
ABLL_1573	argG	ABLL_1573	ABLL_1607	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.994
ABLL_1573	carA	ABLL_1573	ABLL_0202	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Carbamoyl phosphate synthase small subunit; Belongs to the CarA family.	0.988
ABLL_1573	carB	ABLL_1573	ABLL_1272	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Carbamoyl phosphate synthase large subunit; Belongs to the CarB family.	0.991
ABLL_1573	pyrB	ABLL_1573	ABLL_0397	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Aspartate carbamoyltransferase catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	0.876
ABLL_2302	ABLL_1573	ABLL_2302	ABLL_1573	Glutamate synthase alpha subunit.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.495
ABLL_2302	ABLL_2483	ABLL_2302	ABLL_2483	Glutamate synthase alpha subunit.	Glutamine synthase; Belongs to the glutamine synthetase family.	0.982
ABLL_2302	argG	ABLL_2302	ABLL_1607	Glutamate synthase alpha subunit.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.506
ABLL_2302	carA	ABLL_2302	ABLL_0202	Glutamate synthase alpha subunit.	Carbamoyl phosphate synthase small subunit; Belongs to the CarA family.	0.919
ABLL_2302	carB	ABLL_2302	ABLL_1272	Glutamate synthase alpha subunit.	Carbamoyl phosphate synthase large subunit; Belongs to the CarB family.	0.963
ABLL_2302	purF	ABLL_2302	ABLL_2584	Glutamate synthase alpha subunit.	Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.	0.943
ABLL_2302	purQ	ABLL_2302	ABLL_2617	Glutamate synthase alpha subunit.	Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...]	0.900
ABLL_2455	ABLL_1108	ABLL_2455	ABLL_1108	Oxidoreductase.	Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.990
ABLL_2455	ABLL_2483	ABLL_2455	ABLL_2483	Oxidoreductase.	Glutamine synthase; Belongs to the glutamine synthetase family.	0.434
ABLL_2455	carA	ABLL_2455	ABLL_0202	Oxidoreductase.	Carbamoyl phosphate synthase small subunit; Belongs to the CarA family.	0.922