Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABLL_1027TRAP transporter permease component. (441 aa)    
Predicted Functional Partners:
ABLL_1028
TRAP transporter periplasmic component.
 
 
 0.995
ABLL_1029
TRAP transporter periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
 
 0.994
ABLL_0102
Conserved hypothetical protein.
  
 0.836
ABLL_1026
Gamma-glutamyltransferase.
 
     0.808
ABLL_0103
TRAP dicarboxylate ABC transporter substrate binding component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.790
ABLL_0135
ABC transporter substrate binding component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.789
ABLL_1025
Conserved hypothetical protein.
       0.737
ABLL_2303
C4-dicarboxylate-binding periplasmic protein.
   
 0.493
ABLL_1023
Hypothetical protein.
       0.469
ABLL_1024
NUDIX hydrolase.
       0.469
Your Current Organism:
Arcobacter sp. L
NCBI taxonomy Id: 944547
Other names: A. sp. L
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