ureB protein (Arcobacter sp. L) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ureB

Urease beta and gamma subunits; Belongs to the urease beta subunit family. (225 aa)

Predicted Functional Partners:

ureB-2

0.999

ABLL_1051

0.990

ABLL_1036

0.980

ABLL_1045

0.960

ureG

0.953

ABLL_1046

0.952

ABLL_1820

0.933

ABLL_1030

0.913

ABLL_1819

0.900

ABLL_1050

0.888

Your Current Organism:

Arcobacter sp. L

NCBI taxonomy Id: 944547
Other names: A. sp. L

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABLL_1030	ABLL_1045	ABLL_1030	ABLL_1045	Ureidoglycolate hydrolase.	Allantoicase.	0.980
ABLL_1030	ABLL_1046	ABLL_1030	ABLL_1046	Ureidoglycolate hydrolase.	Ureidoglycolate hydrolase.	0.918
ABLL_1030	ureB	ABLL_1030	ABLL_1048	Ureidoglycolate hydrolase.	Urease beta and gamma subunits; Belongs to the urease beta subunit family.	0.913
ABLL_1030	ureB-2	ABLL_1030	ABLL_1049	Ureidoglycolate hydrolase.	Urease alpha subunit.	0.913
ABLL_1036	ABLL_1050	ABLL_1036	ABLL_1050	Urease accessory protein UreD.	Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.	0.516
ABLL_1036	ABLL_1051	ABLL_1036	ABLL_1051	Urease accessory protein UreD.	Urease accessory protein UreF.	0.959
ABLL_1036	ureB	ABLL_1036	ABLL_1048	Urease accessory protein UreD.	Urease beta and gamma subunits; Belongs to the urease beta subunit family.	0.980
ABLL_1036	ureB-2	ABLL_1036	ABLL_1049	Urease accessory protein UreD.	Urease alpha subunit.	0.926
ABLL_1036	ureG	ABLL_1036	ABLL_1052	Urease accessory protein UreD.	Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.	0.864
ABLL_1045	ABLL_1030	ABLL_1045	ABLL_1030	Allantoicase.	Ureidoglycolate hydrolase.	0.980
ABLL_1045	ABLL_1046	ABLL_1045	ABLL_1046	Allantoicase.	Ureidoglycolate hydrolase.	0.996
ABLL_1045	ABLL_1050	ABLL_1045	ABLL_1050	Allantoicase.	Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.	0.538
ABLL_1045	ABLL_1051	ABLL_1045	ABLL_1051	Allantoicase.	Urease accessory protein UreF.	0.497
ABLL_1045	ureB	ABLL_1045	ABLL_1048	Allantoicase.	Urease beta and gamma subunits; Belongs to the urease beta subunit family.	0.960
ABLL_1045	ureB-2	ABLL_1045	ABLL_1049	Allantoicase.	Urease alpha subunit.	0.955
ABLL_1045	ureG	ABLL_1045	ABLL_1052	Allantoicase.	Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.	0.484
ABLL_1046	ABLL_1030	ABLL_1046	ABLL_1030	Ureidoglycolate hydrolase.	Ureidoglycolate hydrolase.	0.918
ABLL_1046	ABLL_1045	ABLL_1046	ABLL_1045	Ureidoglycolate hydrolase.	Allantoicase.	0.996
ABLL_1046	ABLL_1050	ABLL_1046	ABLL_1050	Ureidoglycolate hydrolase.	Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.	0.538
ABLL_1046	ABLL_1051	ABLL_1046	ABLL_1051	Ureidoglycolate hydrolase.	Urease accessory protein UreF.	0.459