Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABLL_1376Conserved hypothetical protein. (175 aa)    
Predicted Functional Partners:
ABLL_1375
Conserved hypothetical protein.
       0.584
ABLL_1377
Phage integrase; Belongs to the 'phage' integrase family.
       0.476
ABLL_1374
Hypothetical protein.
       0.410
Your Current Organism:
Arcobacter sp. L
NCBI taxonomy Id: 944547
Other names: A. sp. L
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