Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABLL_1850Phage DNA transposition protein. (232 aa)    
Predicted Functional Partners:
ABLL_1849
Phage DNA transposition protein.
 
 
 0.979
ABLL_1865
Hypothetical phage protein.
 
     0.790
ABLL_1866
Hypothetical phage protein.
 
    0.780
ABLL_1853
Hypothetical phage protein.
 
    0.776
ABLL_1847
Hypothetical protein.
       0.773
ABLL_1848
Hypothetical protein.
       0.773
ABLL_1851
Hypothetical protein.
       0.773
ABLL_1867
Hypothetical phage protein.
 
     0.675
ABLL_1864
Hypothetical phage protein.
 
     0.656
ABLL_0856
Conserved hypothetical protein.
   
   0.603
Your Current Organism:
Arcobacter sp. L
NCBI taxonomy Id: 944547
Other names: A. sp. L
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