Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABLL_1902TonB-dependent receptor protein. (790 aa)    
Predicted Functional Partners:
ABLL_1903
Sigma factor regulator.
 
 
 0.936
ABLL_2048
Sigma factor regulator.
 
 
 0.864
ABLL_1904
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.804
ABLL_0871
Sulfite reductase flavoprotein component.
 
  
 0.698
ABLL_1411
Putative TonB-dependent siderophore receptor.
  
     0.623
ABLL_1901
Conserved hypothetical protein.
       0.477
ABLL_2791
RND efflux system outer membrane lipoprotein.
  
    0.473
ABLL_0865
TonB-dependent receptor protein.
  
  
0.466
ABLL_2568
Putative fusaric acid resistance protein.
  
    0.460
ABLL_0869
Iron-regulated outer membrane virulence protein.
  
  
0.458
Your Current Organism:
Arcobacter sp. L
NCBI taxonomy Id: 944547
Other names: A. sp. L
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