ABLL_1920 protein (Arcobacter sp. L) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABLL_1920

long-chain-fatty-acid-CoA ligase. (580 aa)

Predicted Functional Partners:

ABLL_1923

0.935

ABLL_1922

0.894

rplE

0.860

ABLL_1921

0.848

ABLL_1924

0.826

gmk

0.747

ABLL_0107

0.728

ABLL_2799

0.654

rplR

0.601

ABLL_1919

0.523

Your Current Organism:

Arcobacter sp. L

NCBI taxonomy Id: 944547
Other names: A. sp. L

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABLL_0107	ABLL_1920	ABLL_0107	ABLL_1920	acyl-CoA dehydrogenase.	long-chain-fatty-acid-CoA ligase.	0.728
ABLL_0107	ABLL_1921	ABLL_0107	ABLL_1921	acyl-CoA dehydrogenase.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.848
ABLL_0107	ABLL_1922	ABLL_0107	ABLL_1922	acyl-CoA dehydrogenase.	Fatty oxidation complex alpha subunit.	0.997
ABLL_1919	ABLL_1920	ABLL_1919	ABLL_1920	Putative peptide deformylase.	long-chain-fatty-acid-CoA ligase.	0.523
ABLL_1919	ABLL_1921	ABLL_1919	ABLL_1921	Putative peptide deformylase.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.523
ABLL_1919	ABLL_1922	ABLL_1919	ABLL_1922	Putative peptide deformylase.	Fatty oxidation complex alpha subunit.	0.523
ABLL_1919	ABLL_1923	ABLL_1919	ABLL_1923	Putative peptide deformylase.	acyl-CoA dehydrogenase.	0.523
ABLL_1919	ABLL_1924	ABLL_1919	ABLL_1924	Putative peptide deformylase.	Esterase.	0.523
ABLL_1920	ABLL_0107	ABLL_1920	ABLL_0107	long-chain-fatty-acid-CoA ligase.	acyl-CoA dehydrogenase.	0.728
ABLL_1920	ABLL_1919	ABLL_1920	ABLL_1919	long-chain-fatty-acid-CoA ligase.	Putative peptide deformylase.	0.523
ABLL_1920	ABLL_1921	ABLL_1920	ABLL_1921	long-chain-fatty-acid-CoA ligase.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.848
ABLL_1920	ABLL_1922	ABLL_1920	ABLL_1922	long-chain-fatty-acid-CoA ligase.	Fatty oxidation complex alpha subunit.	0.894
ABLL_1920	ABLL_1923	ABLL_1920	ABLL_1923	long-chain-fatty-acid-CoA ligase.	acyl-CoA dehydrogenase.	0.935
ABLL_1920	ABLL_1924	ABLL_1920	ABLL_1924	long-chain-fatty-acid-CoA ligase.	Esterase.	0.826
ABLL_1920	ABLL_2799	ABLL_1920	ABLL_2799	long-chain-fatty-acid-CoA ligase.	Metallophosphoesterase.	0.654
ABLL_1920	gmk	ABLL_1920	ABLL_0663	long-chain-fatty-acid-CoA ligase.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.747
ABLL_1920	rplE	ABLL_1920	ABLL_0986	long-chain-fatty-acid-CoA ligase.	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	0.860
ABLL_1920	rplR	ABLL_1920	ABLL_0990	long-chain-fatty-acid-CoA ligase.	50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.601
ABLL_1921	ABLL_0107	ABLL_1921	ABLL_0107	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	acyl-CoA dehydrogenase.	0.848
ABLL_1921	ABLL_1919	ABLL_1921	ABLL_1919	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Putative peptide deformylase.	0.523