ABLL_1961 protein (Arcobacter sp. L) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABLL_1961

Hypothetical protein. (212 aa)

Predicted Functional Partners:

rpoC

0.914

rpoB

0.914

ABLL_1962

0.783

ABLL_1963

0.773

ABLL_1926

0.772

aqpZ

0.728

ABLL_2228

0.689

ABLL_2534

0.688

ABLL_1964

0.576

rpoA

0.569

Your Current Organism:

Arcobacter sp. L

NCBI taxonomy Id: 944547
Other names: A. sp. L

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABLL_1926	ABLL_1961	ABLL_1926	ABLL_1961	GTP-binding protein.	Hypothetical protein.	0.772
ABLL_1926	ABLL_1964	ABLL_1926	ABLL_1964	GTP-binding protein.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.605
ABLL_1926	aqpZ	ABLL_1926	ABLL_2027	GTP-binding protein.	Aquaporin; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.447
ABLL_1961	ABLL_1926	ABLL_1961	ABLL_1926	Hypothetical protein.	GTP-binding protein.	0.772
ABLL_1961	ABLL_1962	ABLL_1961	ABLL_1962	Hypothetical protein.	Aldose 1-epimerase.	0.783
ABLL_1961	ABLL_1963	ABLL_1961	ABLL_1963	Hypothetical protein.	Beta-lactamase.	0.773
ABLL_1961	ABLL_1964	ABLL_1961	ABLL_1964	Hypothetical protein.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.576
ABLL_1961	ABLL_2228	ABLL_1961	ABLL_2228	Hypothetical protein.	6-pyruvoyl-tetrahydropterin synthase.	0.689
ABLL_1961	ABLL_2534	ABLL_1961	ABLL_2534	Hypothetical protein.	Conserved hypothetical protein.	0.688
ABLL_1961	aqpZ	ABLL_1961	ABLL_2027	Hypothetical protein.	Aquaporin; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.728
ABLL_1961	rpoA	ABLL_1961	ABLL_1771	Hypothetical protein.	DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.569
ABLL_1961	rpoB	ABLL_1961	ABLL_2469	Hypothetical protein.	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.914
ABLL_1961	rpoC	ABLL_1961	ABLL_2468	Hypothetical protein.	DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.914
ABLL_1962	ABLL_1961	ABLL_1962	ABLL_1961	Aldose 1-epimerase.	Hypothetical protein.	0.783
ABLL_1962	ABLL_1963	ABLL_1962	ABLL_1963	Aldose 1-epimerase.	Beta-lactamase.	0.812
ABLL_1962	ABLL_1964	ABLL_1962	ABLL_1964	Aldose 1-epimerase.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.576
ABLL_1963	ABLL_1961	ABLL_1963	ABLL_1961	Beta-lactamase.	Hypothetical protein.	0.773
ABLL_1963	ABLL_1962	ABLL_1963	ABLL_1962	Beta-lactamase.	Aldose 1-epimerase.	0.812
ABLL_1963	ABLL_1964	ABLL_1963	ABLL_1964	Beta-lactamase.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.551
ABLL_1964	ABLL_1926	ABLL_1964	ABLL_1926	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	GTP-binding protein.	0.605