Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABLL_2019ABC transporter permease component. (374 aa)    
Predicted Functional Partners:
ABLL_2020
ABC transporter ATP-binding component.
 
 
0.971
ABLL_2021
Conserved hypothetical protein.
 
  
 0.963
ABLL_1346
ABC transporter ATP-binding component.
 
 0.961
ABLL_0235
ABC transporter permease component.
    
  0.837
ABLL_1765
Two-component sensor kinase.
  
 
  0.778
ABLL_2314
Diguanylate cyclase.
  
 
  0.778
ABLL_0223
Two-component sensor kinase.
    
  0.774
ABLL_1633
Two-component sensor kinase.
    
  0.774
ABLL_1725
Two-component sensor kinase.
    
  0.774
ABLL_2211
Two-component sensor kinase.
    
  0.774
Your Current Organism:
Arcobacter sp. L
NCBI taxonomy Id: 944547
Other names: A. sp. L
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