ABLL_2811 protein (Arcobacter sp. L) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABLL_2811

Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family. (137 aa)

Predicted Functional Partners:

ABLL_2103

0.882

ABLL_2352

0.882

ABLL_2185

0.881

htpG

0.785

dnaK

0.747

grpE

0.695

hslV

0.604

ABLL_1225

0.597

ABLL_0889

0.577

lon

0.560

Your Current Organism:

Arcobacter sp. L

NCBI taxonomy Id: 944547
Other names: A. sp. L

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABLL_0889	ABLL_2811	ABLL_0889	ABLL_2811	Conserved hypothetical protein.	Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.577
ABLL_1225	ABLL_2103	ABLL_1225	ABLL_2103	ATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	ATP-dependent Clp protease ATP-binding subunit; Belongs to the ClpA/ClpB family.	0.572
ABLL_1225	ABLL_2185	ABLL_1225	ABLL_2185	ATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	ATPase; Belongs to the ClpA/ClpB family.	0.564
ABLL_1225	ABLL_2352	ABLL_1225	ABLL_2352	ATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	ATP-dependent Clp protease ATP-binding subunit; Belongs to the ClpA/ClpB family.	0.564
ABLL_1225	ABLL_2811	ABLL_1225	ABLL_2811	ATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.597
ABLL_1225	dnaK	ABLL_1225	ABLL_2665	ATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.869
ABLL_1225	grpE	ABLL_1225	ABLL_2666	ATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	Heat shock protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP- [...]	0.905
ABLL_1225	hslV	ABLL_1225	ABLL_1224	ATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	ATP-dependent protease peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.	0.999
ABLL_1225	htpG	ABLL_1225	ABLL_2026	ATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	Heat shock protein 90; Molecular chaperone. Has ATPase activity.	0.893
ABLL_1225	lon	ABLL_1225	ABLL_0722	ATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	ATP-dependent protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.	0.894
ABLL_2103	ABLL_1225	ABLL_2103	ABLL_1225	ATP-dependent Clp protease ATP-binding subunit; Belongs to the ClpA/ClpB family.	ATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	0.572
ABLL_2103	ABLL_2811	ABLL_2103	ABLL_2811	ATP-dependent Clp protease ATP-binding subunit; Belongs to the ClpA/ClpB family.	Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.882
ABLL_2103	dnaK	ABLL_2103	ABLL_2665	ATP-dependent Clp protease ATP-binding subunit; Belongs to the ClpA/ClpB family.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.978
ABLL_2103	grpE	ABLL_2103	ABLL_2666	ATP-dependent Clp protease ATP-binding subunit; Belongs to the ClpA/ClpB family.	Heat shock protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP- [...]	0.866
ABLL_2103	hslV	ABLL_2103	ABLL_1224	ATP-dependent Clp protease ATP-binding subunit; Belongs to the ClpA/ClpB family.	ATP-dependent protease peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.	0.456
ABLL_2103	htpG	ABLL_2103	ABLL_2026	ATP-dependent Clp protease ATP-binding subunit; Belongs to the ClpA/ClpB family.	Heat shock protein 90; Molecular chaperone. Has ATPase activity.	0.754
ABLL_2103	lon	ABLL_2103	ABLL_0722	ATP-dependent Clp protease ATP-binding subunit; Belongs to the ClpA/ClpB family.	ATP-dependent protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.	0.617
ABLL_2185	ABLL_1225	ABLL_2185	ABLL_1225	ATPase; Belongs to the ClpA/ClpB family.	ATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity.	0.564
ABLL_2185	ABLL_2811	ABLL_2185	ABLL_2811	ATPase; Belongs to the ClpA/ClpB family.	Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.881
ABLL_2185	dnaK	ABLL_2185	ABLL_2665	ATPase; Belongs to the ClpA/ClpB family.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.977