STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS38942.1Hypothetical protein. (202 aa)    
Predicted Functional Partners:
EGS38934.1
Identified by match to protein family HMM PF06265.
       0.902
EGS38936.1
HAD hydrolase, TIGR01457 family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702.
  
    0.854
EGS36963.1
Identified by match to protein family HMM PF08876.
  
     0.691
EGS38933.1
N-6 DNA Methylase; Identified by match to protein family HMM PF02384.
       0.582
ackA
Acetate kinase; Identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016.
       0.549
EGS37310.1
Putative phosphoesterase; Identified by match to protein family HMM PF00149; match to protein family HMM TIGR03729.
 
     0.530
EGS37416.1
Hypothetical protein.
  
     0.528
EGS37326.1
Transcriptional regulator, MerR family; Identified by match to protein family HMM PF00376.
  
     0.498
EGS39542.1
Hypothetical protein.
  
     0.494
EGS37403.1
Hypothetical protein.
  
     0.491
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.