STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS38935.1Prepilin-type cleavage/methylation N-terminal domain protein. (142 aa)    
Predicted Functional Partners:
EGS38941.1
Conserved domain protein; Overlaps another CDS with the same product name.
       0.785
EGS38937.1
Conserved domain protein; Overlaps another CDS with the same product name.
       0.773
EGS38939.1
Putative ComG operon protein 3; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
       0.701
EGS38938.1
Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
       0.700
EGS38943.1
Type II/IV secretion system protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00437.
       0.607
EGS38933.1
N-6 DNA Methylase; Identified by match to protein family HMM PF02384.
       0.431
ackA
Acetate kinase; Identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016.
       0.412
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.