Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EGS36419.1 | EGS37837.1 | HMPREF9102_0179 | HMPREF9102_0916 | Putative flavodoxin; Identified by match to protein family HMM PF00258. | Bacterial ABC transporter protein EcsB; Identified by match to protein family HMM PF05975. | 0.403 |
| EGS36419.1 | EGS37966.1 | HMPREF9102_0179 | HMPREF9102_0291 | Putative flavodoxin; Identified by match to protein family HMM PF00258. | Negative regulator of genetic competence (MecA); Identified by match to protein family HMM PF05389. | 0.400 |
| EGS36419.1 | EGS37987.1 | HMPREF9102_0179 | HMPREF9102_0301 | Putative flavodoxin; Identified by match to protein family HMM PF00258. | Stage III sporulation protein E family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.507 |
| EGS36419.1 | EGS38104.1 | HMPREF9102_0179 | HMPREF9102_0328 | Putative flavodoxin; Identified by match to protein family HMM PF00258. | Identified by match to protein family HMM PF08866. | 0.585 |
| EGS36419.1 | EGS39011.1 | HMPREF9102_0179 | HMPREF9102_0019 | Putative flavodoxin; Identified by match to protein family HMM PF00258. | Identified by match to protein family HMM PF06103. | 0.694 |
| EGS36419.1 | ezrA | HMPREF9102_0179 | HMPREF9102_0937 | Putative flavodoxin; Identified by match to protein family HMM PF00258. | Septation ring formation regulator EzrA; Identified by match to protein family HMM PF06160. | 0.434 |
| EGS37837.1 | EGS36419.1 | HMPREF9102_0916 | HMPREF9102_0179 | Bacterial ABC transporter protein EcsB; Identified by match to protein family HMM PF05975. | Putative flavodoxin; Identified by match to protein family HMM PF00258. | 0.403 |
| EGS37837.1 | EGS37966.1 | HMPREF9102_0916 | HMPREF9102_0291 | Bacterial ABC transporter protein EcsB; Identified by match to protein family HMM PF05975. | Negative regulator of genetic competence (MecA); Identified by match to protein family HMM PF05389. | 0.572 |
| EGS37837.1 | EGS37987.1 | HMPREF9102_0916 | HMPREF9102_0301 | Bacterial ABC transporter protein EcsB; Identified by match to protein family HMM PF05975. | Stage III sporulation protein E family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.680 |
| EGS37837.1 | EGS38019.1 | HMPREF9102_0916 | HMPREF9102_0314 | Bacterial ABC transporter protein EcsB; Identified by match to protein family HMM PF05975. | Cell division protein FtsQ; Identified by match to protein family HMM PF03799; match to protein family HMM PF08478. | 0.750 |
| EGS37837.1 | EGS39011.1 | HMPREF9102_0916 | HMPREF9102_0019 | Bacterial ABC transporter protein EcsB; Identified by match to protein family HMM PF05975. | Identified by match to protein family HMM PF06103. | 0.676 |
| EGS37837.1 | ezrA | HMPREF9102_0916 | HMPREF9102_0937 | Bacterial ABC transporter protein EcsB; Identified by match to protein family HMM PF05975. | Septation ring formation regulator EzrA; Identified by match to protein family HMM PF06160. | 0.749 |
| EGS37966.1 | EGS36419.1 | HMPREF9102_0291 | HMPREF9102_0179 | Negative regulator of genetic competence (MecA); Identified by match to protein family HMM PF05389. | Putative flavodoxin; Identified by match to protein family HMM PF00258. | 0.400 |
| EGS37966.1 | EGS37837.1 | HMPREF9102_0291 | HMPREF9102_0916 | Negative regulator of genetic competence (MecA); Identified by match to protein family HMM PF05389. | Bacterial ABC transporter protein EcsB; Identified by match to protein family HMM PF05975. | 0.572 |
| EGS37966.1 | EGS38019.1 | HMPREF9102_0291 | HMPREF9102_0314 | Negative regulator of genetic competence (MecA); Identified by match to protein family HMM PF05389. | Cell division protein FtsQ; Identified by match to protein family HMM PF03799; match to protein family HMM PF08478. | 0.535 |
| EGS37966.1 | EGS38104.1 | HMPREF9102_0291 | HMPREF9102_0328 | Negative regulator of genetic competence (MecA); Identified by match to protein family HMM PF05389. | Identified by match to protein family HMM PF08866. | 0.460 |
| EGS37966.1 | EGS39011.1 | HMPREF9102_0291 | HMPREF9102_0019 | Negative regulator of genetic competence (MecA); Identified by match to protein family HMM PF05389. | Identified by match to protein family HMM PF06103. | 0.694 |
| EGS37966.1 | ezrA | HMPREF9102_0291 | HMPREF9102_0937 | Negative regulator of genetic competence (MecA); Identified by match to protein family HMM PF05389. | Septation ring formation regulator EzrA; Identified by match to protein family HMM PF06160. | 0.661 |
| EGS37966.1 | spxA | HMPREF9102_0291 | HMPREF9102_0290 | Negative regulator of genetic competence (MecA); Identified by match to protein family HMM PF05389. | Transcriptional regulator Spx; Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617. | 0.906 |
| EGS37987.1 | EGS36419.1 | HMPREF9102_0301 | HMPREF9102_0179 | Stage III sporulation protein E family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Putative flavodoxin; Identified by match to protein family HMM PF00258. | 0.507 |
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