STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS38994.1Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040. (178 aa)    
Predicted Functional Partners:
rdgB
Non-canonical purine NTP pyrophosphatase RdgB; Identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042.
 
  
 0.994
murI
Glutamate racemase; Identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067.
       0.917
EGS39015.1
CBS domain protein; Identified by match to protein family HMM PF00571.
 
    0.912
EGS39008.1
Hypothetical protein.
       0.739
EGS38093.1
Helicase, RecD/TraA family; Identified by match to protein family HMM TIGR01448.
 
  
 0.584
EGS35953.1
Hypothetical protein.
  
     0.559
ahpC
Peroxiredoxin; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR03137.
  
 
 0.502
phoU
Phosphate transport system regulatory protein PhoU; Identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135.
     
 0.462
EGS36122.1
Polyprenyl synthetase; Identified by match to protein family HMM PF00348.
     
 0.460
atpD
ATP synthase F1, beta subunit; Identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR01039.
      
 0.457
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.