STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
murIGlutamate racemase; Identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067. (266 aa)    
Predicted Functional Partners:
rdgB
Non-canonical purine NTP pyrophosphatase RdgB; Identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042.
    0.992
EGS38994.1
Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040.
       0.917
alr
Alanine racemase; Identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492.
 
   
 0.898
ribD
Riboflavin biosynthesis protein RibD; Identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326.
     
 0.832
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143.
 
  
 0.821
EGS39008.1
Hypothetical protein.
       0.817
mscL
Large conductance mechanosensitive channel protein; Identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220.
     
 0.802
EGS39015.1
CBS domain protein; Identified by match to protein family HMM PF00571.
       0.793
murD
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02875.
 
   
 0.745
EGS37936.1
Mur ligase middle domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08245.
 
   
 0.734
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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