STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS39023.1RNAse H domain protein, YqgF family; Identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250. (147 aa)    
Predicted Functional Partners:
EGS38992.1
Identified by match to protein family HMM PF06135.
 
    0.989
EGS38985.1
Identified by match to protein family HMM PF06949.
  
    0.972
alaS
alanine--tRNA ligase; Identified by match to protein family HMM PF01411; match to protein family HMM PF02272; match to protein family HMM PF07973; match to protein family HMM TIGR00344.
  
  
 0.925
EGS39022.1
Recombination and DNA strand exchange inhibitor protein; Identified by match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069.
       0.870
EGS39004.1
Identified by match to protein family HMM PF02674.
       0.869
EGS39021.1
Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200.
       0.800
EGS38136.1
DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
       0.800
trxA
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068.
       0.568
EGS38172.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
       0.563
cshB
DEAD-box ATP-dependent RNA helicase CshB; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.
  
    0.521
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.