STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS39017.1Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193. (432 aa)    
Predicted Functional Partners:
EGS37297.1
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.
  
 
 0.995
EGS38999.1
Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF05193.
 
  
 0.993
pgsA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560.
     
 0.890
EGS38996.1
Hypothetical protein.
       0.888
atpA
ATP synthase F1, alpha subunit; Identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM PF09378; match to protein family HMM TIGR00962.
   
 0.785
spoIIIE
Stage III sporulation protein E; Identified by match to protein family HMM PF01580; match to protein family HMM PF09397.
       0.781
atpC
ATP synthase F1, epsilon subunit; Identified by match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216.
   
 0.772
EGS38130.1
RNA methyltransferase, TrmH family, group 2; Identified by match to protein family HMM PF00588.
  
    0.770
atpH
ATP synthase F1, delta subunit; Identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145.
  
 
 0.721
atpG
ATP synthase F1, gamma subunit; Identified by match to protein family HMM PF00231; match to protein family HMM TIGR01146.
   
 0.695
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.